MASCOT Search ResultsMASCOT Search Results| User | : | Ricarda |
|---|---|---|
| : | Haberlea_dry | |
| MS data file | : | Haberlea_dry.mgf |
| Database | : | Tair10 20150119 (35,386 sequences; 14,482,855 residues) |
| Timestamp | : | 26 Feb 2020 at 02:54:06 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | Trypsin |
| Variable modifications | : | Carbamidomethyl (C), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm (# 13C = 1) |
| Fragment mass tolerance | : | ± 0.5 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-QUAD-TOF |
| Number of queries | : | 4,939 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event.
There are 60 peptide matches above identity threshold and 102 matches above homology threshold for 4,939 queries. Histogram score range is (0, 78). On average, individual ions scores > 27 (beyond green shading) indicate identity or extensive homology (p<0.05).
[Deprecated] Protein score distribution. Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Modification | Site | Above thr. |
|---|---|---|
| Oxidation | M | 8 |
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-05 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-06 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-07 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-05 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-05 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.
1| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT1G78900.1 | 148 | | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623 |
2| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATCG00680.1 | 104 | | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508 |
3| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATCG00120.1 | 93 | | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507 |
4| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT3G52990.1 | 93 | | Symbols: | Pyruvate kinase family protein | chr3:19649046-19652237 FORWARD LENGTH=527 |
5| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATCG00480.1 | 83 | | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=498 | |
| 2 | AT5G08670.1 | 69 | | Symbols: | ATP synthase alpha/beta family protein | chr5:2818395-2821149 REVERSE LENGTH=556 | |
6| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT1G20260.1 | 76 | | Symbols: | ATPase, V1 complex, subunit B protein | chr1:7016971-7020290 FORWARD LENGTH=487 |
7| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT3G09790.1 | 72 | | Symbols: UBQ8 | ubiquitin 8 | chr3:3004111-3006006 REVERSE LENGTH=631 |
8| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT4G04640.1 | 70 | | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373 |
9| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT2G27030.1 | 65 | | Symbols: CAM5, ACAM-2 | calmodulin 5 | chr2:11532069-11533060 FORWARD LENGTH=149 |
10| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AT1G79750.1 | 59 | | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646 |
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